Welcome to Chorus’s documentation!

Contents:

• Install
  • Docker (For Unix & Windows)
    • Terminal version
    • GUI version
  • Manually Install
    • Linux (Ubuntu)
    • MacOS
    • Windows 10 (WSL)
• Tutorial
  • Use Chorus2 to design oligo probes for plant genome
    • Install Chorus2
    • Run Chorus2
  • Use ChorusHomo to design oligo probes for close related species
    • Run ChorusHomo
  • Use ChorusNoRef to design oligo probes without a reference genome
    • Run ChorusNoRef
  • Video Tutorials
    • Youtube Playlist
    • Bilibili Playlist
• Chorus2 best practices
  • A guide pipeline for designing probes for Oligo-FISH in potato (Solanum tuberosum).
    • I. Requirements & Dependencies
    • II. Preparation for Chorus2 pipeline
    • III. Perform Chorus2 pipeline for Oligo-FISH probes design
• Video tutorials
  • YouTube
  • bilibili
• Description of functions in Chorus2
  • Major functions
    • Chorus2
    • ChorusNGSfilter
    • ChorusNGSselect
    • ChorusHomo
    • ChorusNoRef
  • Miscellaneous functions
    • ChorusDraftPrebuild
    • ChorusGUI
    • ChorusPBGUI

Indices and tables

• Index
• Module Index
• Search Page
• Jiming Jiang’s Lab
• ZhangTaoLab
• taozhang.org